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4th International Open Data Conference
avatar for Martin Krallinger

Martin Krallinger

Spanish National Cancer Research Center (CNIO)
Title proposal: OpenMinted: an open, service-oriented ep-Infrastructure for Text and Data Mining (TDM) of scientific and scholarly content

Biography: Dr. Martin Krallinger is currently working at the Spanish National Cancer research Centre and is honorary visiting professor at the Pompeu Fabra University. He is an expert in the field of biomedical text data mining. Martin Krallinger has been working in this and related research topics since more than ten years, which resulted in over 50 publications, book chapters and review papers. Among the specific research questions that he has addressed during his scientific career are biomedical named entity recognition and annotation standards (chemical compounds and mutations), information extraction systems (adverse reactions, protein-interactions), semantic annotation of documents with biomedical ontology concepts, text-mining assisted biocuration workflows, interoperability standards and formats for text annotations (BioC) and text-bound annotation infrastructures (MyMiner). He also participated in the development of the first biomedical text annotation meta-server (Biocreative metaserver - BCMS) and is one of the main organizers of BioCreative community assessment challenges for the evaluation of biomedical natural language processing tools. He is currently involved in text-mining related activities of the European projects eTOX and OpenMinted.